PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G137700.1.p
Common NameSETIT_031887mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 133aa    MW: 14435.4 Da    PI: 7.7872
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G137700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26074.81.7e-23771164
              DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvye 64
                        +C aCk+lrrkC+k+Cv+apyf+++q +++fa++hk+FGasn +kll++l+++ r++a+ ++ y 
  Seita.2G137700.1.p  7 PCGACKFLRRKCVKGCVFAPYFCHDQgAAHFAAIHKVFGASNASKLLTNLSDTVRSEAAVTMSYM 71
                        7*************************89**********************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.3866108IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-21782IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MTGFGSPCGA CKFLRRKCVK GCVFAPYFCH DQGAAHFAAI HKVFGASNAS KLLTNLSDTV  60
RSEAAVTMSY MLASLKAQAS QGYTNEFLMP GTQQDNICEN KFVAYQQGEE DVQKNGYYGM  120
DTLQTMALAY LN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274825.19e-41PREDICTED: LOB domain-containing protein 29
SwissprotQ9SLB66e-36LBD17_ARATH; LOB domain-containing protein 17
TrEMBLK3ZZ555e-96K3ZZ55_SETIT; Uncharacterized protein
STRINGSi031887m1e-95(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.13e-37LBD family protein